Pluk-based bioinformatics and biophysics data analysis

  1. Brodsky L.I., Vasilyev A.V., Kalaidzidis Ya.L., Osipov Yu.S., Tatuzov R.L., Feranchuk S.I., GeneBee : The program package for biopolymer structure analysis., DIMACS Series in Discrete Mathematics and Theoretical Computer Science AMS, v.8, p127-140, 1992.
  2. Brodsky L.I., Ivanov V.V, Kalaidzidis Ya.L., Leontovich A.M., Feranchuk S.I., Drachev V.A., GeneBee- Net Internet based server for biopolymer structure analysis., Biochemestry (Moscow), v.60, n.8, pp. 923-8, 1995.
  3. Kalaidzidis I.V., Kalaidzidis Ya.L., Kaulen A.D., Flash-induced voltage changes in halorhodopsin from Natronobacterium pharaonis, FEBS Letters 427, 1998, p.59-63.
  4. Kalaidzidis I.V., Belevich I.N., Kalaidzidis Ya.L., Kaulen A.D., Membrane potential stabilizes the O intermediate in liposome containing bacteriorhodosin, FEBS Letters, v.459, 1999, n.1, pp. 143-147.
  5. Belevich I.N., Kalaidzidis I.V., Kalaidzidis Ya.L., Kaulen A.D., Electrogenic processes accompanying the proton and halide anion transport at the bacterorhodopsin and halorhodopsin photocircles, Proc. of 2 Biophysical Conference of Russia, (Trudy 2 s’ezda biofizikov Rossii), Moscow, 23-27 August 1999, pp. 187-188.
  6. S.A. Vasil'ev, A. V. Alexeevski, S. A. Spirin, V. N. Tashlitski, A. S. Karyagina-Zhulina, Y. Kalaidzidis, DNA-Protein Interaction DataBaseProject: Bioinformatic DataBase of Third Genertion. European Meeting on Psychosocial Aspects of Genetics (EMPAG) 2002 May 25 - 27, 2002
  7. Brodsky L., Kositsky M., Leontovich A., Shutman M., Feinstein E., Kalaidzidis Ya., Gene Expression Analysis tools, Annual Israeli Bioinformatics Symposium 2002, May 14, Weizmann Institute of Science
  8. Ya.L.Kalaidzidis, I.V.Kalaidzidis, Occupancy of two primary chloride-binding sites in the halorhodopsin of N.pharaonis as a condition for active anion transport. 10-th International conference on retinal proteins, Seattle, USA, August 20-24, 2002, pp. 149.
  9. Ya.L.Kalaidzidis, I.V.Kalaidzidis, Halorhodopsin chloride-binding sites and active anion transport, Biochemestry (Moscow), 2003, v.68, n.3, pp. 428-434.
  10. Sergey Vasiliev, Yannis Kalaidzidis, Hanjo Hennemann , PIA LIMS: a laboratory information management system for high throughput projects based on PLUK technology, ISMB 2004.
  11. Kalaidzidis Yannis, Kalaidzidis Inna, Non-exponential processes in the bacteriorhodopsin intermediate M formation, 11th International Conference on Retinal Proteins, Frauenchimsee, Germany, June 20-24, 2004
  12. O. Gopta, L. Khitrina, I. Kalaidzidis, L. Brown, Y. Kalaidzidis, The Net Charge transport by Neurospora Rhodopsin Photocycle, Conference “Russian bioenergetics: from molecule to cell”, Moscow, Russia, 21-23 Feb.2005
  13. Gopta, O, Kalaidzidis, I, Brown, L, Kalaidzidis, Y, The electrogenesis of Neurospora Rhodopsin photocycle,14th European Bioenergetic Conference Location: Moscow, RUSSIA Date: JUL 22-27, 2006
  14. Gopta O. A.; Kalaidzidis Y. L.; Semenov A. Yu.; Golbeck, J. H. Analysis of charge recombination kinetics in cyanobacterial photosystem I with site-specific substitutions in the vicinity of the phylloquinone molecules, 14th European Bioenergetic Conference Location: Moscow, RUSSIA Date: JUL 22-27, 2006
  15. Kalaidzidis Yannis L.; Gopta Oxana; Kalaidzidis Inna V., Revisiting the Generalization of Entropy for Non-positive Distribution: Application for Exponent Spectra Analysis, 9th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering Location: Oxford, MS Date: JUL 05-10, 2009
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